BendingRigidity

class hoomd.md.mesh.bending.BendingRigidity(mesh)

Bases: MeshPotential

Bending potential.

Parameters:

mesh (hoomd.mesh.Mesh) – Mesh data structure constraint.

BendingRigidity specifies a bending energy applied to all mesh triangles in mesh.

\[U(i) = \frac{1}{2} k \sum_{j \in \mathrm{Neigh}(i)} ( 1 - cos(\theta_{ij}))\]

with \(\theta_{ij}\) is the angle between the two normal directors of the bordering triangles of bond \(i\) and \(j\).

Example:

bending_potential = hoomd.md.mesh.bending.BendingRigidity(mesh)
bending_potential.params["mesh"] = dict(k=10.0)

Members inherited from AutotunedObject:

property kernel_parameters

Kernel parameters. Read more...

property is_tuning_complete

Check if kernel parameter tuning is complete. Read more...

tune_kernel_parameters()

Start tuning kernel parameters. Read more...


Members inherited from Force:

additional_energy

Additional energy term. Read more...

additional_virial

Additional virial tensor term \(W_\mathrm{additional}\). Read more...

cpu_local_force_arrays

Local force arrays on the CPU. Read more...

energies

Energy contribution \(U_i\) from each particle. Read more...

energy

The potential energy \(U\) of the system from this force. Read more...

forces

The force \(\vec{F}_i\) applied to each particle. Read more...

gpu_local_force_arrays

Local force arrays on the GPU. Read more...

torques

The torque \(\vec{\tau}_i\) applied to each particle. Read more...

virials

Virial tensor contribution \(W_i\) from each particle. Read more...


Members inherited from MeshPotential:

mesh

Mesh data structure used to compute the bond potential. Read more...


Members defined in BendingRigidity:

params

The parameter of the bending energy for the defined mesh. The mesh type name defaults to “mesh”. The dictionary has the following keys:

  • k (float, required) - bending stiffness \([\mathrm{energy}]\)

Type:

TypeParameter[mesh name,dict]