Index

_

__call__() (hoomd.filter.ParticleFilter method) (hoomd.trigger.Trigger method) (hoomd.variant.Variant method) __contains__() (hoomd.Operations method) __eq__() (hoomd.filter.ParticleFilter method) __getattr__() (hoomd.custom.CustomOperation method) __hash__() (hoomd.filter.ParticleFilter method) __iadd__() (hoomd.logging.Logger method) (hoomd.Operations method)

__isub__() (hoomd.logging.Logger method) (hoomd.Operations method) __iter__() (hoomd.Operations method) __len__() (hoomd.Operations method) __setitem__() (hoomd.logging.Logger method) __str__() (hoomd.filter.ParticleFilter method) _Method (class in hoomd.md.methods)

A

a (hoomd.hpmc.integrate.HPMCIntegrator attribute) A (hoomd.variant.Cycle attribute) (hoomd.variant.Power attribute) (hoomd.variant.Ramp attribute) acceleration (hoomd.data.ParticleLocalAccessBase attribute) act() (hoomd.custom.Action method) (hoomd.custom.CustomOperation method) Action (class in hoomd.custom) action() (hoomd.custom.CustomOperation property) Action.Flags (class in hoomd.custom) Active (class in hoomd.md.force) active_force (hoomd.md.force.Active attribute) active_torque (hoomd.md.force.Active attribute) add() (hoomd.logging.Logger method) (hoomd.Operations method) After (class in hoomd.trigger) All (class in hoomd.filter)

ALL (hoomd.logging.TypeFlags attribute) alpha (hoomd.md.methods.Brownian attribute) (hoomd.md.methods.Langevin attribute) always_compute_pressure() (hoomd.Simulation property) And (class in hoomd.trigger) Angle (class in hoomd.md.angle) angle (hoomd.logging.TypeFlags attribute) angle_types() (hoomd.State property) AngleLocalAccessBase (class in hoomd.data) angles() (hoomd.data.LocalSnapshot property) (hoomd.data.LocalSnapshotGPU property) (hoomd.Snapshot property) angular_momentum (hoomd.data.ParticleLocalAccessBase attribute) aniso (hoomd.md.Integrator attribute) any() (hoomd.logging.TypeFlags class method) attach() (hoomd.custom.Action method) auto_select() (in module hoomd.device)

B

B (hoomd.variant.Cycle attribute) (hoomd.variant.Power attribute) (hoomd.variant.Ramp attribute) barostat_dof (hoomd.md.methods.NPT attribute) barrier() (hoomd.communicator.Communicator method) barrier_all() (hoomd.communicator.Communicator method) BaseIntegrator (class in hoomd.integrate) Before (class in hoomd.trigger) Bond (class in hoomd.md.bond) bond (hoomd.logging.TypeFlags attribute) bond_types() (hoomd.State property) BondLocalAccessBase (class in hoomd.data)

bonds() (hoomd.data.LocalSnapshot property) (hoomd.data.LocalSnapshotGPU property) (hoomd.Snapshot property) Box (class in hoomd) box() (hoomd.State property) box1 (hoomd.update.BoxResize attribute) box2 (hoomd.update.BoxResize attribute) box_dof (hoomd.md.methods.NPT attribute) BoxResize (class in hoomd.update) Brownian (class in hoomd.md.methods) Buckingham (class in hoomd.md.pair) buffer (hoomd.md.nlist.NList attribute)

C

Cell (class in hoomd.md.nlist) charge (hoomd.data.ParticleLocalAccessBase attribute) check_dist (hoomd.md.nlist.NList attribute) check_initialization() (hoomd.md.constrain.ConstraintForce method) clamp_into_domain() (hoomd.tune.ManualTuneDefinition method) Clusters (class in hoomd.hpmc.update) Communicator (class in hoomd.communicator) communicator() (hoomd.device.Device property) compile_date (in module hoomd.version) compile_flags (in module hoomd.version) complete() (hoomd.hpmc.update.QuickCompress property) Compute (class in hoomd.operation) compute() (hoomd.trigger.Trigger method) compute_energy() (hoomd.md.pair.Pair method) computes() (hoomd.Operations property) configuration() (hoomd.Snapshot property) Constant (class in hoomd.variant) constraint (hoomd.logging.TypeFlags attribute) ConstraintForce (class in hoomd.md.constrain) ConstraintLocalAccessBase (class in hoomd.data) constraints (hoomd.md.Integrator attribute) constraints() (hoomd.data.LocalSnapshot property) (hoomd.data.LocalSnapshotGPU property) (hoomd.Snapshot property)

ConvexPolygon (class in hoomd.hpmc.integrate) ConvexPolyhedron (class in hoomd.hpmc.integrate) ConvexSpheropolygon (class in hoomd.hpmc.integrate) ConvexSpheropolyhedron (class in hoomd.hpmc.integrate) ConvexSpheropolyhedronUnion (class in hoomd.hpmc.integrate) Cosinesq (class in hoomd.md.angle) Coulomb (class in hoomd.md.special_pair) counter() (hoomd.hpmc.update.Clusters property) counters() (hoomd.hpmc.integrate.HPMCIntegrator property) couple (hoomd.md.methods.NPT attribute) CPU (class in hoomd.device) cpu_local_snapshot() (hoomd.State property) create_state_from_gsd() (hoomd.Simulation method) create_state_from_snapshot() (hoomd.Simulation method) cube() (hoomd.Box class method) cur_id (hoomd.md.constrain.ConstraintForce attribute) CustomOperation (class in hoomd.custom) CustomTuner (class in hoomd.tune) CustomUpdater (class in hoomd.update) CustomWriter (class in hoomd.write) cxx_compiler (in module hoomd.version) Cycle (class in hoomd.variant)

D

d (hoomd.hpmc.integrate.HPMCIntegrator attribute) default() (hoomd.data.typeparam.TypeParameter property) degrees_of_freedom() (hoomd.md.compute.ThermodynamicQuantities property) delimiter (hoomd.write.Table attribute) detach() (hoomd.custom.Action method) deterministic (hoomd.md.nlist.Cell attribute) Device (class in hoomd.device) device() (hoomd.Simulation property) devices() (hoomd.device.Device property) diameter (hoomd.data.ParticleLocalAccessBase attribute) diameter_shift (hoomd.md.nlist.NList attribute) Dihedral (class in hoomd.md.dihedral) dihedral (hoomd.logging.TypeFlags attribute)

dihedral_types() (hoomd.State property) DihedralLocalAccessBase (class in hoomd.data) dihedrals() (hoomd.data.LocalSnapshot property) (hoomd.data.LocalSnapshotGPU property) (hoomd.Snapshot property) dimensions() (hoomd.Box property) disable() (hoomd.md.constrain.ConstraintForce method) DLVO (class in hoomd.md.pair) domain() (hoomd.tune.ManualTuneDefinition property) DPD (class in hoomd.md.pair) DPDConservative (class in hoomd.md.pair) DPDLJ (class in hoomd.md.pair) dt (hoomd.md.Integrator attribute)

E

Ellipsoid (class in hoomd.hpmc.integrate) enable() (hoomd.md.constrain.ConstraintForce method) enable_profiling() (hoomd.device.GPU method)

Ewald (class in hoomd.md.pair) exclusions (hoomd.md.nlist.NList attribute) exists() (hoomd.Snapshot property)

F

FacetedEllipsoid (class in hoomd.hpmc.integrate) FacetedEllipsoidUnion (class in hoomd.hpmc.integrate) FENE (class in hoomd.md.bond) filter (hoomd.md.force.Active attribute) (hoomd.md.methods.Brownian attribute) (hoomd.md.methods.Langevin attribute) (hoomd.md.methods.NPT attribute) (hoomd.md.methods.NVE attribute) (hoomd.md.methods.NVT attribute) flags (hoomd.custom.Action attribute)

flags() (hoomd.logging.Logger property) flip_probability (hoomd.hpmc.update.Clusters attribute) Force (class in hoomd.md.force) forces (hoomd.md.Integrator attribute) ForceShiftedLJ (class in hoomd.md.pair) Fourier (class in hoomd.md.pair) from_box() (hoomd.Box class method) from_matrix() (hoomd.Box class method) from_state() (hoomd.hpmc.integrate.HPMCIntegrator class method) fugacity (hoomd.hpmc.integrate.HPMCIntegrator attribute)

G

gamma (hoomd.md.methods.Brownian attribute) (hoomd.md.methods.Langevin attribute) (hoomd.md.methods.NPT attribute) gamma_r (hoomd.md.methods.Brownian attribute) (hoomd.md.methods.Langevin attribute) Gauss (class in hoomd.md.pair) get_available_devices() (hoomd.device.GPU static method) get_box() (hoomd.update.BoxResize method) get_unavailable_device_reasons() (hoomd.device.GPU static method) git_branch (in module hoomd.version)

git_sha1 (in module hoomd.version) global_box() (hoomd.data.LocalSnapshot property) (hoomd.data.LocalSnapshotGPU property) GPU (class in hoomd.device) gpu_api_version (in module hoomd.version) gpu_enabled (in module hoomd.version) gpu_error_checking() (hoomd.device.GPU property) gpu_local_snapshot() (hoomd.State property) gpu_platform (in module hoomd.version) grid (hoomd.tune.ParticleSorter attribute) GSD (class in hoomd.write)

H

Harmonic (class in hoomd.md.angle) (class in hoomd.md.bond) (class in hoomd.md.dihedral) header_sep (hoomd.write.Table attribute) hoomd module hoomd.communicator module hoomd.custom module hoomd.data module hoomd.data.array module hoomd.device module hoomd.filter module hoomd.hpmc module hoomd.hpmc.integrate module hoomd.hpmc.tune module hoomd.hpmc.update module hoomd.integrate module hoomd.logging module hoomd.md module hoomd.md.angle module

hoomd.md.bond module hoomd.md.compute module hoomd.md.constrain module hoomd.md.dihedral module hoomd.md.force module hoomd.md.methods module hoomd.md.nlist module hoomd.md.pair module hoomd.md.special_pair module hoomd.operation module hoomd.trigger module hoomd.tune module hoomd.update module hoomd.variant module hoomd.version module hoomd.write module HOOMDArray (class in hoomd.data.array) HOOMDGPUArray (class in hoomd.data.array) HPMCIntegrator (class in hoomd.hpmc.integrate)

I

image (hoomd.data.ParticleLocalAccessBase attribute) improper (hoomd.logging.TypeFlags attribute) improper_types() (hoomd.State property) ImproperLocalAccessBase (class in hoomd.data) impropers() (hoomd.data.LocalSnapshot property) (hoomd.data.LocalSnapshotGPU property) (hoomd.Snapshot property)

in_domain() (hoomd.tune.ManualTuneDefinition method) install_dir (in module hoomd.version) Integrator (class in hoomd.md) integrator() (hoomd.Operations property) interaction_matrix (hoomd.hpmc.integrate.HPMCIntegrator attribute) Intersection (class in hoomd.filter) is2D() (hoomd.Box property) is_available() (hoomd.device.GPU static method)

K

keys() (hoomd.data.typeparam.TypeParameter method) kinetic_energy() (hoomd.md.compute.ThermodynamicQuantities property) kinetic_temperature() (hoomd.md.compute.ThermodynamicQuantities property)

kT (hoomd.md.methods.Brownian attribute) (hoomd.md.methods.Langevin attribute) (hoomd.md.methods.NPT attribute) (hoomd.md.methods.NVT attribute)

L

L() (hoomd.Box property) Langevin (class in hoomd.md.methods) lattice_vectors() (hoomd.Box property) limit (hoomd.md.methods.NVE attribute) linear_volume() (hoomd.update.BoxResize class method) LJ (class in hoomd.md.pair) (class in hoomd.md.special_pair) LJ1208 (class in hoomd.md.pair) LoadBalancer (class in hoomd.tune) local_box() (hoomd.data.LocalSnapshot property) (hoomd.data.LocalSnapshotGPU property) localize_abort() (hoomd.communicator.Communicator method)

LocalSnapshot (class in hoomd.data) LocalSnapshotGPU (class in hoomd.data) log() (hoomd.logging.Logger method) (in module hoomd.logging) loggables() (hoomd.custom.Action property) (hoomd.hpmc.integrate.HPMCIntegrator property) (hoomd.Simulation property) Logger (class in hoomd.logging) logger (hoomd.write.Table attribute) Lx() (hoomd.Box property) Ly() (hoomd.Box property) Lz() (hoomd.Box property)

M

ManualTuneDefinition (class in hoomd.tune) map_energies() (hoomd.hpmc.integrate.HPMCIntegrator method) map_overlaps() (hoomd.hpmc.integrate.HPMCIntegrator property) mass (hoomd.data.ParticleLocalAccessBase attribute) matrix() (hoomd.Box property) max_diameter (hoomd.md.nlist.NList attribute) max_header_len (hoomd.write.Table attribute) max_iterations (hoomd.tune.LoadBalancer attribute) max_overlaps_per_particle (hoomd.hpmc.update.QuickCompress attribute) max_precision (hoomd.write.Table attribute) max_rotation_move (hoomd.hpmc.tune.MoveSize attribute) max_translation_move (hoomd.hpmc.tune.MoveSize attribute) max_x() (hoomd.tune.ManualTuneDefinition property) members (hoomd.data.AngleLocalAccessBase attribute) (hoomd.data.BondLocalAccessBase attribute) (hoomd.data.ConstraintLocalAccessBase attribute) (hoomd.data.DihedralLocalAccessBase attribute) (hoomd.data.ImproperLocalAccessBase attribute) (hoomd.data.PairLocalAccessBase attribute) memory_traceback() (hoomd.device.GPU property) methods (hoomd.md.Integrator attribute) Mie (class in hoomd.md.pair) min_column_width (hoomd.write.Table attribute) min_scale (hoomd.hpmc.update.QuickCompress attribute) min_x() (hoomd.tune.ManualTuneDefinition property) module hoomd hoomd.communicator hoomd.custom hoomd.data hoomd.data.array hoomd.device hoomd.filter hoomd.hpmc hoomd.hpmc.integrate hoomd.hpmc.tune hoomd.hpmc.update hoomd.integrate hoomd.logging hoomd.md hoomd.md.angle hoomd.md.bond hoomd.md.compute hoomd.md.constrain hoomd.md.dihedral hoomd.md.force hoomd.md.methods hoomd.md.nlist hoomd.md.pair hoomd.md.special_pair hoomd.operation hoomd.trigger hoomd.tune hoomd.update hoomd.variant hoomd.version hoomd.write

Moliere (class in hoomd.md.pair) moment_of_inertia (hoomd.data.ParticleLocalAccessBase attribute) Morse (class in hoomd.md.pair) move_ratio (hoomd.hpmc.update.Clusters attribute) moves (hoomd.hpmc.tune.MoveSize attribute) MoveSize (class in hoomd.hpmc.tune) mpi_enabled (in module hoomd.version) mps() (hoomd.hpmc.integrate.HPMCIntegrator property) msg_file() (hoomd.device.Device property)

N

N_angles() (hoomd.State property) N_bonds() (hoomd.State property) N_dihedrals() (hoomd.State property) N_impropers() (hoomd.State property) N_particles() (hoomd.State property) N_special_pairs() (hoomd.State property) net_force (hoomd.data.ParticleLocalAccessBase attribute) net_torque (hoomd.data.ParticleLocalAccessBase attribute) net_virial (hoomd.data.ParticleLocalAccessBase attribute) NList (class in hoomd.md.nlist)

NONE (hoomd.logging.TypeFlags attribute) Not (class in hoomd.trigger) notice_level() (hoomd.device.Device property) NPT (class in hoomd.md.methods) nselect (hoomd.hpmc.integrate.HPMCIntegrator attribute) num_cpu_threads() (hoomd.device.Device property) num_particles() (hoomd.md.compute.ThermodynamicQuantities property) num_ranks() (hoomd.communicator.Communicator property) NVE (class in hoomd.md.methods) NVT (class in hoomd.md.methods)

O

object (hoomd.logging.TypeFlags attribute) On (class in hoomd.trigger) only_default() (hoomd.logging.Logger property) Operation (class in hoomd.operation) Operations (class in hoomd)

operations() (hoomd.Simulation property) OPLS (class in hoomd.md.dihedral) Or (class in hoomd.trigger) orientation (hoomd.data.ParticleLocalAccessBase attribute) output (hoomd.write.Table attribute) overlaps() (hoomd.hpmc.integrate.HPMCIntegrator property)

P

Pair (class in hoomd.md.pair) pair (hoomd.logging.TypeFlags attribute) PairLocalAccessBase (class in hoomd.data) pairs() (hoomd.data.LocalSnapshot property) (hoomd.data.LocalSnapshotGPU property) (hoomd.Snapshot property) params (hoomd.md.angle.Cosinesq attribute) (hoomd.md.angle.Harmonic attribute) (hoomd.md.bond.FENE attribute) (hoomd.md.bond.Harmonic attribute) (hoomd.md.dihedral.Harmonic attribute) (hoomd.md.dihedral.OPLS attribute) (hoomd.md.pair.Buckingham attribute) (hoomd.md.pair.DLVO attribute) (hoomd.md.pair.DPD attribute) (hoomd.md.pair.DPDConservative attribute) (hoomd.md.pair.DPDLJ attribute) (hoomd.md.pair.Ewald attribute) (hoomd.md.pair.ForceShiftedLJ attribute) (hoomd.md.pair.Fourier attribute) (hoomd.md.pair.Gauss attribute) (hoomd.md.pair.LJ attribute) (hoomd.md.pair.LJ1208 attribute) (hoomd.md.pair.Mie attribute) (hoomd.md.pair.Moliere attribute) (hoomd.md.pair.Morse attribute) (hoomd.md.pair.ReactionField attribute) (hoomd.md.pair.SLJ attribute) (hoomd.md.pair.Yukawa attribute) (hoomd.md.pair.ZBL attribute) (hoomd.md.special_pair.Coulomb attribute) (hoomd.md.special_pair.LJ attribute)

particle (hoomd.logging.TypeFlags attribute) particle_types() (hoomd.State property) ParticleFilter (class in hoomd.filter) ParticleLocalAccessBase (class in hoomd.data) particles() (hoomd.data.LocalSnapshot property) (hoomd.data.LocalSnapshotGPU property) (hoomd.Snapshot property) ParticleSorter (class in hoomd.tune) partition() (hoomd.communicator.Communicator property) period (hoomd.trigger.Periodic attribute) Periodic (class in hoomd.trigger) periodic() (hoomd.Box property) phase (hoomd.trigger.Periodic attribute) pivot_moves() (hoomd.hpmc.update.Clusters property) Polyhedron (class in hoomd.hpmc.integrate) position (hoomd.data.ParticleLocalAccessBase attribute) potential_energy() (hoomd.md.compute.ThermodynamicQuantities property) Power (class in hoomd.variant) power (hoomd.variant.Power attribute) pressure() (hoomd.md.compute.ThermodynamicQuantities property) pressure_tensor() (hoomd.md.compute.ThermodynamicQuantities property) pretty (hoomd.write.Table attribute)

Q

QuickCompress (class in hoomd.hpmc.update)

R

r_cut (hoomd.md.pair.Pair attribute) (hoomd.md.special_pair.Coulomb attribute) (hoomd.md.special_pair.LJ attribute) r_on (hoomd.md.pair.Pair attribute) Ramp (class in hoomd.variant) rank() (hoomd.communicator.Communicator property) ReactionField (class in hoomd.md.pair) rebuild_check_delay (hoomd.md.nlist.NList attribute) reflection_moves() (hoomd.hpmc.update.Clusters property) remove() (hoomd.logging.Logger method) (hoomd.Operations method) replicate() (hoomd.Snapshot method) (hoomd.State method) rescale_all (hoomd.md.methods.NPT attribute)

rigid_body_id (hoomd.data.ParticleLocalAccessBase attribute) rotate_moves() (hoomd.hpmc.integrate.HPMCIntegrator property) rotation_diff (hoomd.md.force.Active attribute) rotational_degrees_of_freedom() (hoomd.md.compute.ThermodynamicQuantities property) rotational_kinetic_energy() (hoomd.md.compute.ThermodynamicQuantities property) rotational_thermostat_dof (hoomd.md.methods.NPT attribute) (hoomd.md.methods.NVT attribute) rtag (hoomd.data.AngleLocalAccessBase attribute) (hoomd.data.BondLocalAccessBase attribute) (hoomd.data.ConstraintLocalAccessBase attribute) (hoomd.data.DihedralLocalAccessBase attribute) (hoomd.data.ImproperLocalAccessBase attribute) (hoomd.data.PairLocalAccessBase attribute) (hoomd.data.ParticleLocalAccessBase attribute) run() (hoomd.Simulation method)

S

S (hoomd.md.methods.NPT attribute) scalar (hoomd.logging.TypeFlags attribute) scale() (hoomd.Box method) scale_particles (hoomd.update.BoxResize attribute) scale_solver() (hoomd.hpmc.tune.MoveSize class method) ScaleSolver (class in hoomd.tune) secant_solver() (hoomd.hpmc.tune.MoveSize class method) SecantSolver (class in hoomd.tune) seed (hoomd.hpmc.integrate.HPMCIntegrator attribute) (hoomd.hpmc.update.Clusters attribute) (hoomd.hpmc.update.QuickCompress attribute) (hoomd.md.force.Active attribute) (hoomd.md.methods.Brownian attribute) (hoomd.md.methods.Langevin attribute) sequence (hoomd.logging.TypeFlags attribute) SetDifference (class in hoomd.filter) shape (hoomd.hpmc.integrate.ConvexPolygon attribute) (hoomd.hpmc.integrate.ConvexPolyhedron attribute) (hoomd.hpmc.integrate.ConvexSpheropolygon attribute) (hoomd.hpmc.integrate.ConvexSpheropolyhedron attribute) (hoomd.hpmc.integrate.ConvexSpheropolyhedronUnion attribute) (hoomd.hpmc.integrate.Ellipsoid attribute) (hoomd.hpmc.integrate.FacetedEllipsoid attribute) (hoomd.hpmc.integrate.FacetedEllipsoidUnion attribute) (hoomd.hpmc.integrate.Polyhedron attribute) (hoomd.hpmc.integrate.SimplePolygon attribute) (hoomd.hpmc.integrate.Sphere attribute) (hoomd.hpmc.integrate.SphereUnion attribute) (hoomd.hpmc.integrate.Sphinx attribute)

shortest_rebuild() (hoomd.md.nlist.NList property) SimplePolygon (class in hoomd.hpmc.integrate) Simulation (class in hoomd) SLJ (class in hoomd.md.pair) Snapshot (class in hoomd) snapshot() (hoomd.State property) solve() (hoomd.tune.SolverStep method) solve_one() (hoomd.tune.ScaleSolver method) (hoomd.tune.SecantSolver method) (hoomd.tune.SolverStep method) solver (hoomd.hpmc.tune.MoveSize attribute) SolverStep (class in hoomd.tune) source_dir (in module hoomd.version) special_pair_types() (hoomd.State property) SpecialPair (class in hoomd.md.special_pair) Sphere (class in hoomd.hpmc.integrate) SphereUnion (class in hoomd.hpmc.integrate) Sphinx (class in hoomd.hpmc.integrate) square() (hoomd.Box class method) State (class in hoomd) state (hoomd.logging.TypeFlags attribute) state() (hoomd.hpmc.integrate.HPMCIntegrator property) (hoomd.Simulation property) string (hoomd.logging.TypeFlags attribute) string_flags() (hoomd.logging.Logger property) strings (hoomd.logging.TypeFlags attribute) swap_move_ratio (hoomd.hpmc.update.Clusters attribute) swap_moves() (hoomd.hpmc.update.Clusters property) swap_types (hoomd.hpmc.update.Clusters attribute)

T

t_A (hoomd.variant.Cycle attribute) t_AB (hoomd.variant.Cycle attribute) t_B (hoomd.variant.Cycle attribute) t_BA (hoomd.variant.Cycle attribute) t_ramp (hoomd.variant.Power attribute) (hoomd.variant.Ramp attribute) t_start (hoomd.variant.Cycle attribute) (hoomd.variant.Power attribute) (hoomd.variant.Ramp attribute) Table (class in hoomd.write) tag (hoomd.data.AngleLocalAccessBase attribute) (hoomd.data.BondLocalAccessBase attribute) (hoomd.data.ConstraintLocalAccessBase attribute) (hoomd.data.DihedralLocalAccessBase attribute) (hoomd.data.ImproperLocalAccessBase attribute) (hoomd.data.PairLocalAccessBase attribute) (hoomd.data.ParticleLocalAccessBase attribute) Tags (class in hoomd.filter) tags() (hoomd.filter.Tags property) target (hoomd.hpmc.tune.MoveSize attribute) target() (hoomd.tune.ManualTuneDefinition property) target_box (hoomd.hpmc.update.QuickCompress attribute) tau (hoomd.md.methods.NPT attribute) (hoomd.md.methods.NVT attribute) tauS (hoomd.md.methods.NPT attribute) tbb_enabled (in module hoomd.version) test_overlap() (hoomd.hpmc.integrate.HPMCIntegrator method) thermalize_particle_momenta() (hoomd.State method) thermalize_thermostat_and_barostat_dof() (hoomd.md.methods.NPT method) thermalize_thermostat_dof() (hoomd.md.methods.NVT method) ThermodynamicQuantities (class in hoomd.md.compute) tilts() (hoomd.Box property) timestep (hoomd.trigger.After attribute) (hoomd.trigger.Before attribute) (hoomd.trigger.On attribute) timestep() (hoomd.Simulation property)

tolerance (hoomd.tune.LoadBalancer attribute) tps() (hoomd.Simulation property) translate_moves() (hoomd.hpmc.integrate.HPMCIntegrator property) translation_move_probability (hoomd.hpmc.integrate.HPMCIntegrator attribute) translational_degrees_of_freedom() (hoomd.md.compute.ThermodynamicQuantities property) translational_kinetic_energy() (hoomd.md.compute.ThermodynamicQuantities property) translational_thermostat_dof (hoomd.md.methods.NPT attribute) (hoomd.md.methods.NVT attribute) Trigger (class in hoomd.trigger) trigger (hoomd.custom.CustomOperation attribute) (hoomd.hpmc.tune.MoveSize attribute) (hoomd.hpmc.update.Clusters attribute) (hoomd.hpmc.update.QuickCompress attribute) (hoomd.trigger.Not attribute) (hoomd.tune.LoadBalancer attribute) (hoomd.tune.ParticleSorter attribute) (hoomd.update.BoxResize attribute) (hoomd.write.Table attribute) triggers (hoomd.trigger.And attribute) (hoomd.trigger.Or attribute) tuned() (hoomd.hpmc.tune.MoveSize property) Tuner (class in hoomd.operation) tuners() (hoomd.Operations property) Type (class in hoomd.filter) type (hoomd.data.ParticleLocalAccessBase attribute) type_shapes() (hoomd.hpmc.integrate.HPMCIntegrator property) TypeFlags (class in hoomd.logging) typeid (hoomd.data.AngleLocalAccessBase attribute) (hoomd.data.BondLocalAccessBase attribute) (hoomd.data.DihedralLocalAccessBase attribute) (hoomd.data.ImproperLocalAccessBase attribute) (hoomd.data.PairLocalAccessBase attribute) TypeParameter (class in hoomd.data.typeparam) types (hoomd.hpmc.tune.MoveSize attribute) types() (hoomd.filter.Type property) (hoomd.State property)

U

Union (class in hoomd.filter) update() (hoomd.update.BoxResize static method) update_coeffs() (hoomd.md.constrain.ConstraintForce method)

update_group_dof() (hoomd.State method) Updater (class in hoomd.operation) updaters() (hoomd.Operations property)

V

value (hoomd.data.ConstraintLocalAccessBase attribute) (hoomd.variant.Constant attribute) Variant (class in hoomd.variant)

variant (hoomd.update.BoxResize attribute) velocity (hoomd.data.ParticleLocalAccessBase attribute) volume() (hoomd.Box property)

W

write() (hoomd.write.GSD static method) (hoomd.write.Table method)

write_debug_data() (hoomd.Simulation method) Writer (class in hoomd.operation) writers() (hoomd.Operations property)

X

x (hoomd.tune.LoadBalancer attribute) x() (hoomd.tune.ManualTuneDefinition property)

xy() (hoomd.Box property) xz() (hoomd.Box property)

Y

y (hoomd.tune.LoadBalancer attribute) y() (hoomd.tune.ManualTuneDefinition property)

Yukawa (class in hoomd.md.pair) yz() (hoomd.Box property)

Z

z (hoomd.tune.LoadBalancer attribute)

ZBL (class in hoomd.md.pair)