Python Module Index
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hoomd | HOOMD-blue main package. | |
hoomd.analyze | Analyze system configurations. | |
hoomd.benchmark | Benchmarking utilities. | |
hoomd.cgcmm | CGCMM coarse grained potential. | |
hoomd.cgcmm.angle | CGCMM angle potential. | |
hoomd.cgcmm.pair | CGCMM pair potential. | |
hoomd.cite | Citation generator. | |
hoomd.comm | MPI run interface. | |
hoomd.compute | Compute system properties. | |
hoomd.context | Manage execution contexts. | |
hoomd.data | Access system configuration data. | |
hoomd.dem | DEM package. | |
hoomd.dem.pair | Compute properties of hard particle configurations. | |
hoomd.dem.utils | Various convenience methods for working with shapes | |
hoomd.deprecated | Deprecated features. | |
hoomd.deprecated.analyze | Deprecated analyzers. | |
hoomd.deprecated.dump | Deprecated trajectory file writers. | |
hoomd.deprecated.init | Deprecated initializers. | |
hoomd.dump | Write system configurations to files. | |
hoomd.group | Group particles. | |
hoomd.hdf5 | Python classes that depend on the h5py package. | |
hoomd.hpmc | HPMC package. | |
hoomd.hpmc.analyze | Compute properties of hard particle configurations. | |
hoomd.hpmc.compute | Compute properties of hard particle configurations. | |
hoomd.hpmc.data | Shape data structures. | |
hoomd.hpmc.field | Apply external fields to HPMC simulations. | |
hoomd.hpmc.integrate | HPMC integrators. | |
hoomd.hpmc.update | HPMC updaters. | |
hoomd.hpmc.util | HPMC utilities. | |
hoomd.init | Initialize the system configuration. | |
hoomd.jit | Experimental package for using JIT compiled C++ code during simulations. | |
hoomd.jit.external | JIT compiled external potentials. | |
hoomd.jit.patch | JIT compiled patch potentials. | |
hoomd.lattice | Define crystal lattices. | |
hoomd.md | Molecular Dynamics. | |
hoomd.md.angle | Angle potentials. | |
hoomd.md.bond | Bond potentials. | |
hoomd.md.charge | Electrostatic potentials. | |
hoomd.md.constrain | Constraints. | |
hoomd.md.dihedral | Dihedral potentials. | |
hoomd.md.external | External forces. | |
hoomd.md.force | Apply forces to particles. | |
hoomd.md.improper | Improper potentials. | |
hoomd.md.integrate | Integration methods. | |
hoomd.md.nlist | Neighbor list acceleration structures. | |
hoomd.md.pair | Pair potentials. | |
hoomd.md.special_pair | Pair potentials between special pairs of particles | |
hoomd.md.update | Update particle properties. | |
hoomd.md.wall | Wall potentials. | |
hoomd.meta | Write out simulation and environment context metadata. | |
hoomd.metal | Metal potentials. | |
hoomd.metal.pair | Metal potentials. | |
hoomd.mpcd | Multiparticle collision dynamics. | |
hoomd.mpcd.collide | Collision methods for MPCD particles | |
hoomd.mpcd.data | Access system configuration data. | |
hoomd.mpcd.init | Initialize the system configuration. | |
hoomd.mpcd.stream | Streaming methods for MPCD particles | |
hoomd.mpcd.update | Updaters for MPCD particles | |
hoomd.option | Set global options. | |
hoomd.update | Modify the system state periodically. | |
hoomd.util | Utilities. | |
hoomd.variant | Specify values that vary over time. |