md.force¶
Overview
Defines a force in HOOMDblue. 

Active force. 

Active force on a manifold. 
Details
Apply forces to particles.
 class hoomd.md.force.Force¶
Defines a force in HOOMDblue.
Pair, angle, bond, and other forces are subclasses of this class.
Note
Force
is the base class for all loggable forces. Users should not instantiate this class directly.Initializes some loggable quantities.
 property additional_energy¶
Additional energy term not included in
energies
\([\mathrm{energy}]\).(
Loggable
: category=”scalar”) Type
 property additional_virial¶
Additional virial tensor term not included in
virials
\([\mathrm{energy}]\).(
Loggable
: category=”sequence”) Type
(1, 6)
numpy.ndarray
offloat
 property energies¶
Energy contribution from each particle \([\mathrm{energy}]\).
Attention
In MPI parallel execution, the array is available on rank 0 only.
energies
isNone
on ranks >= 1.(
Loggable
: category=”particle”) Type
(N_particles, )
numpy.ndarray
offloat
 property energy¶
Total contribution to the potential energy of the system \([\mathrm{energy}]\).
(
Loggable
: category=”scalar”) Type
 property forces¶
The force applied to each particle \([\mathrm{force}]\).
Attention
In MPI parallel execution, the array is available on rank 0 only.
forces
isNone
on ranks >= 1.(
Loggable
: category=”particle”) Type
(N_particles, 3)
numpy.ndarray
offloat
 property torques¶
The torque applied to each particle \([\mathrm{force} \cdot \mathrm{length}]\).
Attention
In MPI parallel execution, the array is available on rank 0 only.
torques
isNone
on ranks >= 1.(
Loggable
: category=”particle”) Type
(N_particles, 3)
numpy.ndarray
offloat
 property virials¶
Virial tensor contribution from each particle \([\mathrm{energy}]\).
The 6 elements form the uppertriangular virial tensor in the order: xx, xy, xz, yy, yz, zz.
Attention
To improve performance
Force
objects only compute virials when needed. When not computed,virials
isNone
. Virials are computed on every step when using amd.methods.NPT
ormd.methods.NPH
integrator, on steps where a writer is triggered (such aswrite.GSD
which may log pressure or virials), or whenSimulation.always_compute_pressure
isTrue
.Attention
In MPI parallel execution, the array is available on rank 0 only.
virials
isNone
on ranks >= 1.(
Loggable
: category=”particle”) Type
(N_particles, 6)
numpy.ndarray
offloat
 class hoomd.md.force.Active(filter)¶
Bases:
hoomd.md.force.Force
Active force.
 Parameters
filter (
hoomd.filter
) – Subset of particles on which to apply active forces.
Active
specifies that an active force should be added to particles selected by the filter. particles. Obeys \(\delta {\bf r}_i = \delta t v_0 \hat{p}_i\), where \(v_0\) is the active velocity. In 2D \(\hat{p}_i = (\cos \theta_i, \sin \theta_i)\) is the active force vector for particle \(i\). The active force and the active torque vectors in the particle frame stay constant during the simulation. Hence, the active forces in the system frame are composed of the forces in particle frame and the current orientation of the particle.Note
To introduce rotational diffusion to the particle orientations, use
create_diffusion_updater
.Examples:
all = hoomd.filter.All() active = hoomd.md.force.Active( filter=hoomd.filter.All() ) active.active_force['A','B'] = (1,0,0) active.active_torque['A','B'] = (0,0,0) rotational_diffusion_updater = active.create_diffusion_updater( trigger=10) sim.operations += rotational_diffusion_updater
 filter¶
Subset of particles on which to apply active forces.
 Type
 active_force¶
Active force vector in the local reference frame of the particle \([\mathrm{force}]\). It is defined per particle type and stays constant during the simulation.
Type:
TypeParameter
[particle_type
,tuple
[float
,float
,float
]]
 active_torque¶
Active torque vector in the local reference frame of the particle \([\mathrm{force} \cdot \mathrm{length}]\). It is defined per particle type and stays constant during the simulation.
Type:
TypeParameter
[particle_type
,tuple
[float
,float
,float
]]
 create_diffusion_updater(trigger, rotational_diffusion)¶
Create a rotational diffusion updater for this active force.
 Parameters
trigger (hoomd.trigger.Trigger) – Select the timesteps to update rotational diffusion.
rotational_diffusion (hoomd.variant.Variant or float) – The rotational diffusion as a function of time or a constant.
 Returns
The rotational diffusion updater.
 Return type
 class hoomd.md.force.ActiveOnManifold(filter, manifold_constraint)¶
Bases:
hoomd.md.force.Active
Active force on a manifold.
 Parameters
filter (
hoomd.filter.ParticleFilter
) – Subset of particles on which to apply active forces.manifold_constraint (
hoomd.md.manifold.Manifold
) – Manifold constraint.
ActiveOnManifold
specifies that a constrained active force should be added to particles selected by the filter similar toActive
. The active force vector \(\hat{p}_i\) is restricted to the local tangent plane of the manifold constraint at point \({\bf r}_i\). For more information seeActive
.Hint
Use
ActiveOnManifold
with amd.methods.rattle
integration method with the same manifold constraint.Examples:
all = filter.All() sphere = hoomd.md.manifold.Sphere(r=10) active = hoomd.md.force.ActiveOnManifold( filter=hoomd.filter.All(), rotation_diff=0.01, manifold_constraint = sphere ) active.active_force['A','B'] = (1,0,0) active.active_torque['A','B'] = (0,0,0)
 filter¶
Subset of particles on which to apply active forces.
 manifold_constraint¶
Manifold constraint.
 active_force¶
Active force vector in the local reference frame of the particle \([\mathrm{force}]\). It is defined per particle type and stays constant during the simulation.
Type:
TypeParameter
[particle_type
,tuple
[float
,float
,float
]]
 active_torque¶
Active torque vector in local reference frame of the particle \([\mathrm{force} \cdot \mathrm{length}]\). It is defined per particle type and stays constant during the simulation.
Type:
TypeParameter
[particle_type
,tuple
[float
,float
,float
]]
 create_diffusion_updater(trigger, rotational_diffusion)¶
Create a rotational diffusion updater for this active force.
 Parameters
trigger (hoomd.trigger.Trigger) – Select the timesteps to update rotational diffusion.
rotational_diffusion (hoomd.variant.Variant or float) – The rotational diffusion as a function of time or a constant.
 Returns
The rotational diffusion updater.
 Return type